as for lighting in Nuke, Katana is coming soon.
the main and biggest difference between AE and Nuke is node based system, which is industry standard. AE is king in the motion graphics field, but that doesn't mean that you can't use it for compositing (Christiansen used it on The Day After Tomorrow, for example)- only that it's much easier with nodes.
stuff worth looking into:
pretty much everything Steve Wright does (2 excellent books on compositing, try Amazon or eBook version; also, CG Workshop and just yesterday released Lynda Nuke course - yeah, baby!

, FxPHD courses, SphereVFX Nuke 3D DVD (and soon to be released 45 hrs long Nuke mega-course), ESC Studios Nuke course.
Gnomon DVDs are somewhat useful (they're for Nuke V4 - different interface, but basics are pretty much he same), but that guy annoyed me extremely.
and there are Ron Brinkmann's "The Art And Science Of Digital Compositing" (worth every dollar, superb stuff; FxPHD VFX 101 course is based on that very book), and Lee Lanier's "Professional Digital Compositing".
of matchmoving: Tim Dobbert has an excellent theory book and 2 Gnomon DVDs, which are perfect companions; then, there's "The Art and Technique of Matchmoving: Solutions for the VFX Artist" by Erica Hornung (soon to be released, hopefully it'll be good); also, I think you're much better of learning stand-alone tracking software (I preffer PFTrack), so go get FxPHD and CMIVfx PFTrack courses (available at your local warez depot everywhere

that Hollywood Camera Work course is also very good, although software agnostic as they like to call it - but you need to grasp the theory first, so pay attention
hope this helps somewhat, enjoy